oxbow.read_bigwig

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oxbow.read_bigwig#

oxbow.read_bigwig(src, region=None, fields=None)#

Return Arrow IPC format from a BigWig file.

Parameters:

  • src (str or file-like) – The path to the source file or a file-like object.

  • region (str) – Genomic range string in the format “chr:start-end”, “chr:[start,end]” or “chr:[start,end)”.

  • fields (list[str], optional) – Names of the fixed fields to project.

Returns:

Arrow IPC

Return type:

bytes

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